STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1748Hypothetical protein; Identified by Glimmer2; putative. (274 aa)    
Predicted Functional Partners:
VC_1750
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.948
VC_1749
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.942
ftsK
Cell division protein FtsK, putative; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the directi [...]
   
 
 0.905
VC_A0048
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.656
VC_1746
Transcriptional regulator, TetR family; Similar to PID:868019 GB:U00096 SP:Q59431 PID:1742672 PID:1742680; identified by sequence similarity; putative.
 
     0.564
VC_1747
Hypothetical protein; Identified by Glimmer2; putative.
       0.559
VC_A0047
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.496
VC_2149
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.493
vgrG3
vgrG protein; Part of the type VI secretion system specialized secretion system, which delivers several virulence factors in both prokaryotic and eukaryotic cells during infection. Forms the spike at the tip of the elongating tube formed by haemolysin co-regulated protein Hcp. Allows the delivery of the TseL antibacterial toxin to target cells where it exerts its toxicity. Additionally, acts directly as an effector and targets the cell wall peptidoglycan layer of prey cells for degradation via its C-terminus. Toxicity is counteracted by a cognate immunity protein TsiV3.
     
 0.432
VC_0106
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.