STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1749Hypothetical protein; Identified by Glimmer2; putative. (408 aa)    
Predicted Functional Partners:
VC_1748
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.942
VC_1750
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.934
VC_2547
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.909
VC_0106
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.592
VC_1747
Hypothetical protein; Identified by Glimmer2; putative.
       0.559
tcpN
TCP pilus virulence regulatory protein; Probable regulatory protein for the tcp operon.
  
     0.476
VC_A0645
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.470
VC_A0048
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.446
VC_1746
Transcriptional regulator, TetR family; Similar to PID:868019 GB:U00096 SP:Q59431 PID:1742672 PID:1742680; identified by sequence similarity; putative.
       0.426
VC_1745
Succinate-semialdehyde dehydrogenase; Similar to GB:M88334 SP:P25526 PID:147901 GB:U00096 PID:1789015; identified by sequence similarity; putative; Belongs to the aldehyde dehydrogenase family.
       0.407
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.