STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1750Hypothetical protein; Identified by Glimmer2; putative. (373 aa)    
Predicted Functional Partners:
VC_1748
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.961
VC_1749
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.933
VC_A0048
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.577
VC_1747
Hypothetical protein; Identified by Glimmer2; putative.
       0.548
VC_0106
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.503
VC_1892
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0227 family.
  
     0.442
VC_1746
Transcriptional regulator, TetR family; Similar to PID:868019 GB:U00096 SP:Q59431 PID:1742672 PID:1742680; identified by sequence similarity; putative.
       0.441
VC_A1013
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.438
VC_0871
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.431
VC_1731
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.425
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.