Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1768Conserved hypothetical protein; Identified by Glimmer2; putative. (462 aa)    
Predicted Functional Partners:
VC_1769
DNA methylase HsdM, putative; Similar to GB:AL123456; identified by sequence similarity; putative.
 
 0.999
VC_1765
Type I restriction enzyme HsdR, putative; Similar to GB:M63891 PID:551948; identified by sequence similarity; putative.
 
  
 0.990
VC_1767
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.861
VC_1766
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.859
VC_0812
Helicase-related protein; Similar to PID:914990; identified by sequence similarity; putative.
  
 
 0.810
VC_1636
Helicase-related protein; Similar to SP:P36927 GB:U00096; identified by sequence similarity; putative.
  
 
 0.793
atpF
ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
 
 0.688
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.681
VC_1762
Hypothetical protein; Identified by Glimmer2; putative.
       0.593
VC_1761
Hypothetical protein; Identified by Glimmer2; putative.
       0.588
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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