STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1769DNA methylase HsdM, putative; Similar to GB:AL123456; identified by sequence similarity; putative. (793 aa)    
Predicted Functional Partners:
VC_1768
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.999
VC_1765
Type I restriction enzyme HsdR, putative; Similar to GB:M63891 PID:551948; identified by sequence similarity; putative.
 
  
 0.996
VC_1767
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.850
VC_1766
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.848
flaG
Flagellin FlaG; Similar to PID:2271029; identified by sequence similarity; putative; To FlaG in other Vibrio species.
    
   0.655
VC_1761
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.600
VC_1762
Hypothetical protein; Identified by Glimmer2; putative.
       0.584
VC_1764
Hypothetical protein; Identified by Glimmer2; putative.
       0.582
VC_A0544
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.573
VC_1760
Helicase, putative; Similar to GB:AL009126; identified by sequence similarity; putative.
     
 0.569
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.