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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1769DNA methylase HsdM, putative; Similar to GB:AL123456; identified by sequence similarity; putative. (793 aa)    
Predicted Functional Partners:
VC_1765
Type I restriction enzyme HsdR, putative; Similar to GB:M63891 PID:551948; identified by sequence similarity; putative.
 
 
 0.999
VC_1768
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.999
VC_1767
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.850
VC_1766
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.848
flaG
Flagellin FlaG; Similar to PID:2271029; identified by sequence similarity; putative; To FlaG in other Vibrio species.
    
   0.793
VC_A0544
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.699
guaB
Inosine-5`-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.677
VC_2523
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.672
VC_A0198
Site-specific DNA-methyltransferase, putative; Similar to SP:P34906; identified by sequence similarity; putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
   
 0.641
VC_1761
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.605
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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