Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1771Hypothetical protein; Identified by Glimmer2; putative. (1220 aa)    
Predicted Functional Partners:
VC_1770
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.994
VC_1772
Hypothetical protein; Identified by Glimmer2; putative.
       0.589
VC_1768
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.563
VC_1769
DNA methylase HsdM, putative; Similar to GB:AL123456; identified by sequence similarity; putative.
 
     0.560
VC_1765
Type I restriction enzyme HsdR, putative; Similar to GB:M63891 PID:551948; identified by sequence similarity; putative.
 
     0.516
VC_1766
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.485
VC_1767
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.485
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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