STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1771Hypothetical protein; Identified by Glimmer2; putative. (1220 aa)    
Predicted Functional Partners:
VC_1770
Hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_1772
Hypothetical protein; Identified by Glimmer2; putative.
       0.589
VC_1768
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.564
VC_1769
DNA methylase HsdM, putative; Similar to GB:AL123456; identified by sequence similarity; putative.
 
     0.560
VC_1765
Type I restriction enzyme HsdR, putative; Similar to GB:M63891 PID:551948; identified by sequence similarity; putative.
 
     0.516
VC_1766
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.485
VC_1767
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.485
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.