Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1795Transcriptional regulator, putative; Similar to SP:P06022 PID:15812 PID:215521 PID:215582; identified by sequence similarity; putative. (106 aa)    
Predicted Functional Partners:
VC_1794
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.863
VC_1796
Middle operon regulator-related protein; Similar to SP:P23848 PID:215576; identified by sequence similarity; putative.
       0.773
VC_1789
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
     
 0.645
VC_1793
Hypothetical protein; Identified by Glimmer2; putative.
       0.574
VC_1792
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.470
VC_0257
Transposase OrfAB, subunit B; Similar to GP:3337013; identified by sequence similarity; putative.
      
 0.447
menH
Conserved hypothetical protein; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).
      
 0.441
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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