STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1798Eha protein; Similar to GP:3746932; identified by sequence similarity; putative. (383 aa)    
Predicted Functional Partners:
VC_1799
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.943
VC_1800
Hypothetical protein; Identified by Glimmer2; putative.
       0.785
VC_1797
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
VC_2199
Flagellar basal-body rod protein FlgC; Similar to GB:U00096 SP:P75935 PID:1787314; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
    
   0.577
VC_A0372
Transposase OrfAB, subunit A; Similar to SP:P39213; identified by sequence similarity; putative.
   
  
 0.522
VC_2632
Fimbrial assembly protein PilO, putative; Similar to GB:U12892 PID:530858; identified by sequence similarity; putative.
 
     0.436
mnmE
Thiophene and furan oxidation protein ThdF; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.433
VC_1801
Hypothetical protein; Identified by Glimmer2; putative.
       0.419
VC_1802
Hypothetical protein; Identified by Glimmer2; putative.
       0.419
VC_0256
Transposase OrfAB, subunit A; Similar to SP:P39213; identified by sequence similarity; putative.
   
  
 0.406
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.