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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1798Eha protein; Similar to GP:3746932; identified by sequence similarity; putative. (383 aa)    
Predicted Functional Partners:
VC_1799
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.944
VC_1800
Hypothetical protein; Identified by Glimmer2; putative.
       0.786
VC_1797
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
VC_2199
Flagellar basal-body rod protein FlgC; Similar to GB:U00096 SP:P75935 PID:1787314; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
    
   0.693
VC_2632
Fimbrial assembly protein PilO, putative; Similar to GB:U12892 PID:530858; identified by sequence similarity; putative.
 
     0.438
VC_A0372
Transposase OrfAB, subunit A; Similar to SP:P39213; identified by sequence similarity; putative.
   
  
 0.437
VC_1801
Hypothetical protein; Identified by Glimmer2; putative.
       0.416
VC_1802
Hypothetical protein; Identified by Glimmer2; putative.
       0.416
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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