Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1806Hypothetical protein; Identified by Glimmer2; putative. (328 aa)    
Predicted Functional Partners:
hutG
Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
      
 0.522
VC_2169
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.522
VC_1805
Hypothetical protein; Identified by Glimmer2; putative.
       0.517
VC_0810
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.463
VC_0821
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.463
VC_1945
FAD monooxygenase, PheA/TfdB family; Similar to SP:P15245 PID:170525; identified by sequence similarity; putative.
      
 0.463
VC_A0096
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.425
VC_1804
Hypothetical protein; Identified by Glimmer2; putative.
       0.421
VC_0809
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.414
VC_0842
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.406
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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