Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1825Transcriptional regulator; Similar to GB:U00096 PID:1788725; identified by sequence similarity; putative. (279 aa)    
Predicted Functional Partners:
VC_0192
Transcriptional regulator, AraC/XylS family; Similar to GP:3294250; identified by sequence similarity; putative.
 
 
 0.774
VC_A1074
Transcriptional regulator, AraC/XylS family; Similar to PID:1185446 SP:Q51872; identified by sequence similarity; putative.
  
     0.753
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
 
 
 0.740
VC_A0231
Transcriptional regulator, AraC/XylS family; Similar to SP:P27029 GB:X57299 PID:47906; identified by sequence similarity; putative.
  
     0.725
VC_2080
Transcriptional regulator, AraC/XylS family; Similar to PID:758214; identified by sequence similarity; putative.
  
     0.723
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.632
VC_1260
Transcriptional regulator, AraC/XylS family; Similar to GP:2906236; identified by sequence similarity; putative.
  
     0.624
VC_A1001
Transcriptional regulator, AraC/XylS family; Similar to GP:3294250; identified by sequence similarity; putative.
  
     0.574
nagK
ROK family protein; Catalyzes the phosphorylation of N-acetyl-D-glucosamine (GlcNAc) derived from cell-wall degradation, yielding GlcNAc-6-P.
      
 0.559
VC_2383
Transcriptional regulator, LysR family; Similar to SP:Q01610 PID:45367; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
    0.557
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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