Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1842Conserved hypothetical protein; Identified by Glimmer2; putative. (35 aa)    
Predicted Functional Partners:
VC_1843
Cytochrome d ubiquinol oxidase, subunit II; Similar to GB:J03939 SP:P11027 PID:145640 GB:U00096 PID:1651328; identified by sequence similarity; putative.
 
 0.986
VC_1570
Quinol oxidase, subunit II; Similar to GP:3550333; identified by sequence similarity; putative.
  
 0.983
VC_1844
Cytochrome d ubiquinol oxidase, subunit I; Similar to PID:1926318; identified by sequence similarity; putative.
 
 0.979
VC_1571
Quinol oxidase, subunit I; Similar to GP:3550332; identified by sequence similarity; putative.
  
 0.976
VC_A0873
Cytochrome d ubiquinol oxidase, subunit II; Similar to GB:J03939 SP:P11027 PID:145640 GB:U00096 PID:1651328; identified by sequence similarity; putative.
 
 
 0.841
VC_A0872
Cytochrome d ubiquinol oxidase, subunit I; Similar to GB:J03939 SP:P11026 PID:497637 GB:U00096 PID:1651327; identified by sequence similarity; putative.
 
 
 0.787
VC_1436
FixS-related protein; Similar to PID:2398785; identified by sequence similarity; putative.
      
 0.547
VC_0351
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.522
VC_A0190
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.521
VC_2146
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.502
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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