STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1844Cytochrome d ubiquinol oxidase, subunit I; Similar to PID:1926318; identified by sequence similarity; putative. (541 aa)    
Predicted Functional Partners:
VC_1843
Cytochrome d ubiquinol oxidase, subunit II; Similar to GB:J03939 SP:P11027 PID:145640 GB:U00096 PID:1651328; identified by sequence similarity; putative.
 0.999
VC_A0873
Cytochrome d ubiquinol oxidase, subunit II; Similar to GB:J03939 SP:P11027 PID:145640 GB:U00096 PID:1651328; identified by sequence similarity; putative.
 0.991
VC_1570
Quinol oxidase, subunit II; Similar to GP:3550333; identified by sequence similarity; putative.
 0.984
VC_1842
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.861
VC_1181
Transport ATP-binding protein CydD; Similar to GB:L42023 SP:P45082 PID:1006505 PID:1221280 PID:1205402; identified by sequence similarity; putative.
 
  
 0.853
VC_1180
Transport ATP-binding protein CydC; Similar to GB:L10383 SP:P23886 GB:L25859 PID:145165 PID:146480; identified by sequence similarity; putative.
 
  
 0.784
VC_A0872
Cytochrome d ubiquinol oxidase, subunit I; Similar to GB:J03939 SP:P11026 PID:497637 GB:U00096 PID:1651327; identified by sequence similarity; putative.
  
  
 
0.697
VC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.676
VC_1571
Quinol oxidase, subunit I; Similar to GP:3550332; identified by sequence similarity; putative.
  
  
 
0.611
VC_1866
Formate acetyltransferase; Similar to GB:X08035 SP:P09373 PID:42370 GB:U00096 PID:1651427; identified by sequence similarity; putative.
   
  
 0.551
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.