STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1853Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0319 family. (224 aa)    
Predicted Functional Partners:
VC_A0573
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
     0.698
VC_2627
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
     0.671
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.612
luxP
luxP protein; Binds to the signaling molecule autoinducer 2 (AI-2), a furanosyl borate diester, (3a-methyl-5,6-dihydrofuro- [2,3d][1,3,2]dioxaborole-2,2,6,6a-tetraol). This complex then interacts with the LuxQ sensor protein (By similarity).
  
     0.567
VC_2058
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.550
VC_1854
Porin, putative; Similar to GP:3377759; identified by sequence similarity; putative.
       0.525
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.522
VC_A0634
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.518
VC_1895
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.503
VC_2358
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.485
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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