STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1885Hypothetical protein; Identified by Glimmer2; putative. (191 aa)    
Predicted Functional Partners:
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.849
VC_0893
Chemotaxis protein PomB; Similar to PID:2130949; identified by sequence similarity; putative.
 
 
 0.803
VC_2060
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.784
VC_0097
Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.774
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.774
VC_2344
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.774
VC_2557
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.774
VC_2601
Sodium-type flagellar protein MotX; Similar to GB:U09005 SP:P40608 PID:507737; identified by sequence similarity; putative.
  
     0.774
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.772
VC_2058
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.770
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.