STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1887Hypothetical protein; Identified by Glimmer2; putative. (266 aa)    
Predicted Functional Partners:
lpoA
Lipoprotein, putative; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a).
  
   
 0.719
VC_2168
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.712
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.700
VC_0399
MSHA biogenesis protein MshI; Similar to PID:791156 PID:791153; identified by sequence similarity; putative.
  
     0.665
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.663
epsL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for secretion of cholera toxin through the outer membrane.
  
     0.654
VC_1885
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.622
epsN
General secretion pathway protein N; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for secretion of cholera toxin through the outer membrane.
  
     0.612
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.601
VC_A0568
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.588
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.