STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1889Ribosomal-protein-serine acetyltransferase, putative; Similar to SP:P13857 GB:X15860 PID:42749 GB:U00096 PID:1742324; identified by sequence similarity; putative. (178 aa)    
Predicted Functional Partners:
VC_1309
Ribosomal-protein-alanine acetyltransferase; Similar to GB:M99278 SP:P09454 GB:X06118 PID:147655 PID:42744; identified by sequence similarity; putative.
  
     0.625
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
    0.621
VC_1887
Hypothetical protein; Identified by Glimmer2; putative.
       0.597
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
    0.578
VC_1885
Hypothetical protein; Identified by Glimmer2; putative.
       0.569
VC_1882
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.563
VC_1884
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.563
VC_A0316
Acetyltransferase, putative; Similar to SP:P05332 GB:X07542 PID:39573; identified by sequence similarity; putative.
  
     0.494
VC_A0417
Acetyltransferase, putative; Similar to SP:P05332 GB:X07542 PID:39573; identified by sequence similarity; putative.
  
     0.494
VC_1888
Hemolysin-related protein; Similar to SP:P09545 GB:M36855 GB:X51746 PID:1136779 PID:155182; identified by sequence similarity; putative.
 
     0.477
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.