Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1895Conserved hypothetical protein; Identified by Glimmer2; putative. (129 aa)    
Predicted Functional Partners:
VC_1894
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.966
VC_1897
Hit family protein; Similar to GB:U00096 PID:1787346; identified by sequence similarity; putative.
  
  
 0.953
VC_1896
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.937
VC_1892
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0227 family.
 
   
 0.876
VC_1893
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.834
VC_A0010
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.724
VC_1899
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.700
VC_2075
Histidine triad family protein; Similar to GB:Pyro_h; identified by sequence similarity; putative.
  
  
 0.639
VC_A0762
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.631
VC_2395
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.624
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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