STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1896Hypothetical protein; Identified by Glimmer2; putative. (472 aa)    
Predicted Functional Partners:
VC_1894
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.955
VC_1895
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.937
VC_1897
Hit family protein; Similar to GB:U00096 PID:1787346; identified by sequence similarity; putative.
       0.842
VC_1893
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.757
VC_1892
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0227 family.
 
     0.743
VC_1899
Hypothetical protein; Identified by Glimmer2; putative.
       0.626
VC_0904
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.563
VC_1898
Methyl-accepting chemotaxis protein; Similar to GB:X61367 PID:48195; identified by sequence similarity; putative.
       0.535
VC_A0023
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.490
lptA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
   
    0.451
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.