Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1906Hypothetical protein; Identified by Glimmer2; putative. (398 aa)    
Predicted Functional Partners:
VC_1907
Cys regulon transcriptional activator; Similar to GB:M15041 SP:P06613 GB:M34332 PID:145665 PID:145667; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.769
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.736
VC_1910
tRNA-(MS[2]IO[6]A)-hydroxylase; Similar to SP:Q08015 PID:312708; identified by sequence similarity; putative.
 
     0.661
VC_2058
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.641
VC_1197
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.523
VC_A0185
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.511
VC_1538
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.505
VC_0457
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.489
VC_1101
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.487
VC_1102
ABC transporter, permease protein, putative; Similar to GB:U14003 SP:P37772 PID:537073 GB:U00096 PID:1790678; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
       0.487
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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