Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1910tRNA-(MS[2]IO[6]A)-hydroxylase; Similar to SP:Q08015 PID:312708; identified by sequence similarity; putative. (258 aa)    
Predicted Functional Partners:
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.793
VC_1906
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.661
VC_1996
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.656
VC_1907
Cys regulon transcriptional activator; Similar to GB:M15041 SP:P06613 GB:M34332 PID:145665 PID:145667; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.642
VC_2090
Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
     0.630
VC_2605
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.588
sthA
Pyridine nucleotide-disulfide oxidoreductase, class I; Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
     0.545
miaB
Conserved hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
      
 0.530
VC_2070
Phosphohistidine phosphatase; Similar to GB:U00096 PID:1788681; identified by sequence similarity; putative.
  
     0.499
VC_2146
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.472
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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