Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
VC_1926C4-dicarboxylate transport transcriptional regulatory protein; Similar to GB:J03683 SP:P13632 GB:M26531 PID:152160 PID:152173; identified by sequence similarity; putative. (446 aa)    
Predicted Functional Partners:
VC_1925
C4-dicarboxylate transport sensor protein; Similar to SP:P10047 GB:X06253 GB:Z11529 PID:46179 PID:46182; identified by sequence similarity; putative.
 0.992
VC_A0142
C4-dicarboxylate transport transcriptional regulatory protein; Similar to SP:P10046 GB:X06253 GB:Z11529 PID:46180 PID:46183; identified by sequence similarity; putative.
  
  
 
0.906
VC_2529
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.819
VC_2748
Nitrogen regulation protein; Similar to SP:P19906 PID:155172; identified by sequence similarity; putative.
 
 
 0.777
VC_1924
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
VC_2067
MinD-related protein; Similar to GP:3695013; identified by sequence similarity; putative.
  
 
 0.770
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (By similarity). Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.542
VC_A0141
C4-dicarboxylate transport sensor protein, putative; Similar to SP:P10047 GB:X06253 GB:Z11529 PID:46179 PID:46182; identified by sequence similarity; putative.
 
 
 0.541
VC_2126
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.537
VC_2198
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
  
  
 0.505
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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