Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1934GGDEF family protein; Similar to GP:3341566; identified by sequence similarity; putative. (655 aa)    
Predicted Functional Partners:
VC_A1083
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.878
VC_A0697
Sensory box/GGDEF family protein; Similar to PID:1001780 PID:1001841; identified by sequence similarity; putative.
 
 
 0.876
VC_2370
Sensory box/GGDEF family protein; Similar to PID:1652133; identified by sequence similarity; putative.
 
 
0.833
VC_1349
Sensory box sensor histidine kinase/response regulator; Similar to PID:1653075; identified by sequence similarity; putative.
  
 
 0.832
VC_2369
Sensor histidine kinase FexB; Similar to SP:P22763 GB:X53315 PID:40951 PID:606149 GB:U00096; identified by sequence similarity; putative.
  
 
 0.832
VC_1367
GGDEF family protein; Similar to PID:633121; identified by sequence similarity; putative.
 
  
 0.821
VC_A0557
GGDEF family protein; Similar to GB:U00096 SP:P75908 PID:1787262; identified by sequence similarity; putative.
 
  
 0.821
VC_1029
GGDEF family protein; Similar to PID:1001216 PID:1673324; identified by sequence similarity; putative.
  
    0.815
VC_1372
GGDEF family protein; Similar to GB:U00096 SP:P75908 PID:1787262; identified by sequence similarity; putative.
  
    0.815
VC_A0217
GGDEF family protein; Similar to GB:AE000657; identified by sequence similarity; putative.
  
    0.815
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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