STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1945FAD monooxygenase, PheA/TfdB family; Similar to SP:P15245 PID:170525; identified by sequence similarity; putative. (487 aa)    
Predicted Functional Partners:
VC_1944
PvcB protein; Similar to GP:3212173; identified by sequence similarity; putative.
 
  
 0.936
VC_1534
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 0.856
VC_A0924
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
 0.791
VC_1949
pvcA protein; Similar to GP:3212172; identified by sequence similarity; putative.
 
  
 0.710
VC_1339
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.678
hmp
Ferrisiderophore reductase; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress (By similarity). Belongs to the globin family. Two-domain flavohemoproteins subfamily.
  
  
 0.661
VC_A0723
3-hydroxy-3-methylglutaryl CoA reductase; Similar to GB:AE000666; identified by sequence similarity; putative.
   
  
 0.640
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
    
 0.639
VC_1584
ankB protein; Similar to PID:563740 PID:1754534; identified by sequence similarity; putative.
  
 
 0.626
VC_A0490
Lipase, GDXG family; Similar to GB:AE000782; identified by sequence similarity; putative.
 
 
 0.530
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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