Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1964Hypothetical protein; Identified by Glimmer2; putative. (291 aa)    
Predicted Functional Partners:
VC_1963
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_1965
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.768
VC_1966
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.727
VC_1310
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.597
VC_1700
Intracellular sepatation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
     0.514
VC_1358
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.477
VC_2305
Outer membrane protein OmpK; Similar to PID:1166401 SP:P51002; identified by sequence similarity; putative.
  
     0.472
VC_0886
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.448
htpX
Heat shock protein HtpX; Similar to GB:M58470 SP:P23894 PID:146412 GB:U00096 PID:1736470; identified by sequence similarity; putative; Belongs to the peptidase M48B family.
   
  
 0.441
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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