STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1968Transcriptional regulator, HTH_3 family; Similar to GB:U00096 SP:P77626 PID:1742340 PID:1742346 PID:1787704; identified by sequence similarity; putative. (181 aa)    
Predicted Functional Partners:
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
    
 0.801
VC_0815
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.778
VC_1970
Benzoate transport protein; Similar to GB:M76990 SP:P07775 PID:141751; identified by sequence similarity; putative.
 
   
 0.752
argA
N-acetylglutamate synthase; Similar to SP:P08205 GB:Y00492 PID:581038 PID:882710 GB:U00096; identified by sequence similarity; putative.
    
  0.694
VC_0464
Transcriptional regulator, LuxR family; Similar to GB:X80506 SP:P45785 PID:516862; identified by sequence similarity; putative.
  
 
 0.506
VC_A0279
Transcriptional regulator, HTH_3 family; Similar to GB:AE000666; identified by sequence similarity; putative.
  
     0.492
VC_0344
N-acetylmuramoyl-L-alanine amidase; Similar to SP:P26365 GB:Z11831 PID:304914 PID:42068 PID:537010; identified by sequence similarity; putative.
    
 0.416
VC_0396
Transcriptional regulator, LuxR family; Similar to PID:1147562 SP:P52106 GB:U00096 PID:1787277; identified by sequence similarity; putative.
    
 0.409
VC_1213
Transcriptional regulator, LuxR family; Similar to GB:M24615 SP:P07027 GB:X03691 PID:43289 PID:551848; identified by sequence similarity; putative.
    
 0.409
VC_1277
Transcriptional regulator, LuxR family; Similar to GB:M21658 SP:P13800 GB:M23649 PID:143089 PID:143499; identified by sequence similarity; putative.
    
 0.409
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.