Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_1986Conserved hypothetical protein; Identified by Glimmer2; putative. (284 aa)    
Predicted Functional Partners:
VC_1987
Outer membrane lipoprotein Slp, putative; Similar to GB:U00096 PID:1736439 PID:1736445 PID:1788108; identified by sequence similarity; putative.
       0.849
VC_1988
Hypothetical protein; Identified by Glimmer2; putative.
       0.849
VC_1985
long-chain-fatty-acid--CoA ligase; Similar to SP:P29212 GB:L02649 GB:X70994 PID:581070 GB:U00096; identified by sequence similarity; putative.
  
 
 0.797
VC_1989
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.770
VC_1990
ATP-dependent helicase, DinG family; Similar to GB:U00096 PID:1736441 PID:1736447 PID:1788110; identified by sequence similarity; putative.
  
    0.770
apaH
Bis(5`-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
  
 
  0.769
VC_1740
Oxidoreductase, acyl-CoA dehydrogenase family; Similar to GP:4902957; identified by sequence similarity; putative.
   
 0.747
VC_2231
Oxidoreductase, acyl-CoA dehydrogenase family; Similar to PID:1208978 PID:984577 GB:U00096 SP:Q47146 PID:1552791; identified by sequence similarity; putative.
   
 0.747
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.695
VC_1584
ankB protein; Similar to PID:563740 PID:1754534; identified by sequence similarity; putative.
  
 0.641
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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