STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1987Outer membrane lipoprotein Slp, putative; Similar to GB:U00096 PID:1736439 PID:1736445 PID:1788108; identified by sequence similarity; putative. (202 aa)    
Predicted Functional Partners:
VC_1986
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_1988
Hypothetical protein; Identified by Glimmer2; putative.
       0.799
VC_1989
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.664
VC_1149
Glutamate decarboxylase, putative; Similar to SP:Q05683 PID:204226; identified by sequence similarity; putative.
   
 
 0.656
VC_A0269
Decarboxylase, group II; Similar to GB:L42023 PID:1161418 PID:1221055 PID:1205195 PID:1573971; identified by sequence similarity; putative.
   
 
 0.656
VC_1990
ATP-dependent helicase, DinG family; Similar to GB:U00096 PID:1736441 PID:1736447 PID:1788110; identified by sequence similarity; putative.
       0.644
smg
Smg protein; Similar to SP:P30853 PID:606218 GB:U00096 PID:1789679; identified by sequence similarity; putative; Belongs to the Smg family.
  
     0.636
VC_1985
long-chain-fatty-acid--CoA ligase; Similar to SP:P29212 GB:L02649 GB:X70994 PID:581070 GB:U00096; identified by sequence similarity; putative.
     
 0.568
VC_2089
Succinate dehydrogenase, flavoprotein subunit; Similar to GB:J01619 SP:P10444 GB:X00980 PID:146199 PID:42925; identified by sequence similarity; putative; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
    
   0.563
VC_2656
Fumarate reductase, flavoprotein subunit; Similar to GB:U14003 SP:P00363 GB:J01611 PID:145263 PID:536998; identified by sequence similarity; putative.
    
   0.563
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.