STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_1991Hypothetical protein; Identified by Glimmer2; putative. (145 aa)    
Predicted Functional Partners:
VC_1989
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.572
VC_1990
ATP-dependent helicase, DinG family; Similar to GB:U00096 PID:1736441 PID:1736447 PID:1788110; identified by sequence similarity; putative.
       0.572
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.459
VC_1986
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.451
VC_1987
Outer membrane lipoprotein Slp, putative; Similar to GB:U00096 PID:1736439 PID:1736445 PID:1788108; identified by sequence similarity; putative.
       0.451
VC_1988
Hypothetical protein; Identified by Glimmer2; putative.
       0.451
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.