STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_19932,4-dienoyl-CoA reductase; Similar to SP:P42593 PID:606019 GB:U00096 PID:1789463; identified by sequence similarity; putative. (666 aa)    
Predicted Functional Partners:
VC_2373
Glutamate synthase, large subunit; Similar to GB:X80485 PID:515938 SP:P55037 PID:1652093; identified by sequence similarity; putative.
  
 0.999
VC_2376
Glutamate synthase, large subunit; Similar to PID:606151 GB:U00096 PID:1789605; identified by sequence similarity; putative.
  
 0.999
VC_1516
Iron-sulfur cluster-binding protein; Similar to GB:X61204 PID:44800 PID:1747410; identified by sequence similarity; putative.
  
 0.950
VC_0312
NAD(P)H-flavin reductase; Similar to GB:D14674 GB:D17746 SP:P43127 PID:498172 PID:511944; identified by sequence similarity; putative.
  
 0.946
VC_A0924
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 0.929
VC_A0530
Pyruvate-flavoredoxin oxidoreductase; Similar to GB:U00096 PID:1742250 PID:1742256 PID:1787642; identified by sequence similarity; putative.
  
 
 0.906
napF
Iron-sulfur cluster-binding protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
 0.896
VC_0311
Ferredoxin; Similar to SP:P46047 PID:599651; identified by sequence similarity; putative.
   
 0.888
VC_0753
Ferredoxin; Similar to GB:M88654 SP:P25528 PID:145915 GB:U00096 PID:1788874; identified by sequence similarity; putative.
   
 0.888
VC_1254
Iron-sulfur cluster-binding protein, putative; Similar to GB:L42023 SP:P45154 PID:1007287 PID:1221440 PID:1205547; identified by sequence similarity; putative.
   
 0.888
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.