Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_1994Protease IV; Similar to GB:M13359 SP:P08395 GB:U13772 GB:U13773 GB:U13774; identified by sequence similarity; putative. (616 aa)    
Predicted Functional Partners:
VC_1995
Similar to SP:P18840 PID:145279 GB:U00096 PID:1742878 PID:1788065; identified by sequence similarity; putative.
       0.730
VC_1993
2,4-dienoyl-CoA reductase; Similar to SP:P42593 PID:606019 GB:U00096 PID:1789463; identified by sequence similarity; putative.
       0.715
VC_2153
D,D-carboxypeptidase-related protein; Similar to GB:L42023 SP:P43941 PID:1003104 PID:1222012 PID:1204359; identified by sequence similarity; putative.
  
   
 0.609
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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