STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1996Conserved hypothetical protein; Identified by Glimmer2; putative. (95 aa)    
Predicted Functional Partners:
msrB
PilB-related protein; Similar to SP:P39903 GB:U00096 PID:1742896 PID:1788077; identified by sequence similarity; putative; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.784
VC_1236
PilB-related protein; Similar to SP:P39903 GB:U00096 PID:1742896 PID:1788077; identified by sequence similarity; putative.
  
    0.774
VC_2090
Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
    0.754
msrAB
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (By similarity).
  
    0.714
VC_2091
Succinate dehydrogenase, cytochrome b556 subunit; Similar to GB:J01619 SP:P10446 GB:X00980 PID:146197 PID:42923; identified by sequence similarity; putative.
  
    0.663
VC_1910
tRNA-(MS[2]IO[6]A)-hydroxylase; Similar to SP:Q08015 PID:312708; identified by sequence similarity; putative.
  
     0.656
syd
Syd protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.646
VC_1002
dedD protein; Similar to GB:M68934 SP:P09549 PID:146366 GB:U00096 PID:1788653; identified by sequence similarity; putative.
  
     0.640
VC_1997
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.634
VC_2605
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.622
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.