Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2004Conserved hypothetical protein; Identified by Glimmer2; putative. (325 aa)    
Predicted Functional Partners:
VC_2003
rRNA (guanine-N1-)-methyltransferase; Similar to GB:D28496 SP:P36999 PID:460699 GB:U00096 PID:1736466; identified by sequence similarity; putative.
       0.821
VC_2005
Hypothetical protein; Identified by Glimmer2; putative.
       0.721
hmuV
Hemin ABC transporter, ATP-binding protein HutD; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
  
 0.502
VC_2001
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the glucose-6-phosphate 1-epimerase family.
       0.487
VC_1983
Peptidase, putative; Similar to SP:P47788 PID:1871406 PID:565284; identified by sequence similarity; putative.
  
     0.465
VC_2002
Hypothetical protein; Identified by Glimmer2; putative.
       0.451
VC_A1008
Outer membrane protein, putative; Similar to PID:1658032; identified by sequence similarity; putative.
  
     0.436
VC_A0064
TonB system receptor, putative; Similar to GB:L27149 PID:529727; identified by sequence similarity; putative.
 
  
 0.432
VC_2621
Extracellular nuclease-related protein; Similar to PID:1185049; identified by sequence similarity; putative.
  
     0.431
ompU
Outer membrane protein OmpU; Forms pores that allow passive diffusion of small molecules across the outer membrane.
  
     0.427
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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