STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2032Hypothetical protein; Identified by Glimmer2; putative. (291 aa)    
Predicted Functional Partners:
VC_0600
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.548
VC_2031
Sulfate permease family protein; Similar to SP:P55189 PID:1256150 GB:AL009126; identified by sequence similarity; putative.
       0.514
VC_0814
Transcriptional regulator, putative; Similar to GB:X76192 SP:P43640 PID:431929; identified by sequence similarity; putative.
  
   
 0.512
VC_A0958
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.503
VC_0183
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.461
VC_0410
MSHA pilin protein MshC; Similar to GB:X77217 PID:496759; identified by sequence similarity; putative.
  
     0.438
VC_0414
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.414
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.