Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
VC_2038Hypothetical protein; Identified by Glimmer2; putative. (404 aa)    
Predicted Functional Partners:
cqsS
Sensor histidine kinase/response regulator LuxN; Senses the quorum-sensing autoinducer CAI-1 ((S)-3- hydroxytridecan-4-one) which probably functions as an intragenus signal. The sensory signal is then relayed to LuxU and LuxO.
 
 
 0.851
VC_0901
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.775
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.764
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.761
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.758
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.746
VC_A0565
Sensor histidine kinase; Similar to GB:AE000511 PID:2313251; identified by sequence similarity; putative.
 
   0.741
VC_1280
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.739
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
  
     0.733
VC_0399
MSHA biogenesis protein MshI; Similar to PID:791156 PID:791153; identified by sequence similarity; putative.
  
     0.731
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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