Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2048vacJ lipoprotein; Similar to GB:U00096 SP:P76506 PID:1788688 PID:1799744; identified by sequence similarity; putative. (254 aa)    
Predicted Functional Partners:
VC_2517
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.932
VC_2518
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.869
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.770
ompU
Outer membrane protein OmpU; Forms pores that allow passive diffusion of small molecules across the outer membrane.
   
 
 0.767
VC_0972
Porin, putative; Similar to SP:P24305; identified by sequence similarity; putative.
   
 
 0.767
VC_1854
Porin, putative; Similar to GP:3377759; identified by sequence similarity; putative.
   
 
 0.767
VC_A1008
Outer membrane protein, putative; Similar to PID:1658032; identified by sequence similarity; putative.
   
 
 0.767
VC_2520
ABC transporter, ATP-binding protein; Similar to SP:P45393 PID:606133 GB:U00096 PID:1789586; identified by sequence similarity; putative.
 
   
 0.714
bamA
Surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.706
VC_2456
Hypothetical protein; Identified by Glimmer2; putative.
    
 
 0.648
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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