STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2081Zinc ABC transporter, periplasmic zinc-binding protein; Similar to GB:U00096 SP:P39172 PID:1736500 PID:1788164; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 9 family. (297 aa)    
Predicted Functional Partners:
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 
 0.992
VC_2083
Zinc ABC transporter, permease protein; Similar to PID:1054959 GB:U00096 PID:1788166; identified by sequence similarity; putative.
 
 
 0.990
fur
Zinc uptake regulation protein, putative; Similar to SP:P32692 PID:409798 GB:U00096 PID:1790480; identified by sequence similarity; putative; Belongs to the Fur family.
  
  
 0.695
VC_0503
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.679
VC_2555
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.564
VC_2080
Transcriptional regulator, AraC/XylS family; Similar to PID:758214; identified by sequence similarity; putative.
       0.520
rpmE2
Ribosomal protein, L31P family; Similar to GB:U00096 PID:1657496 PID:2367109; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL31 family. Type B subfamily.
   
  
 0.499
VC_A1043
tagE protein; Similar to GB:AE000511 PID:2314724; identified by sequence similarity; putative.
 
  
 0.476
VC_0630
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.408
VC_0843
tagE protein; Similar to GB:U07173 PID:460955 PID:1100877; identified by sequence similarity; putative.
  
  
 0.408
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.