Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2083Zinc ABC transporter, permease protein; Similar to PID:1054959 GB:U00096 PID:1788166; identified by sequence similarity; putative. (260 aa)    
Predicted Functional Partners:
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 0.999
VC_2081
Zinc ABC transporter, periplasmic zinc-binding protein; Similar to GB:U00096 SP:P39172 PID:1736500 PID:1788164; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.998
fur
Zinc uptake regulation protein, putative; Similar to SP:P32692 PID:409798 GB:U00096 PID:1790480; identified by sequence similarity; putative; Belongs to the Fur family.
  
  
 0.710
VC_2552
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.609
rpmE2
Ribosomal protein, L31P family; Similar to GB:U00096 PID:1657496 PID:2367109; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL31 family. Type B subfamily.
   
  
 0.581
VC_2555
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.556
VC_A0591
Peptide ABC transporter, periplasmic peptide-binding protein, putative; Similar to SP:P33913 GB:U00008 PID:453986 GB:U00096 PID:1788503; identified by sequence similarity; putative.
    
 0.506
VC_A0920
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.500
fur-2
Ferric uptake regulation protein; Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon.
  
  
 0.482
VC_2551
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.482
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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