STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_2093Conserved hypothetical protein; Identified by Glimmer2; putative. (256 aa)    
Predicted Functional Partners:
VC_0648
Conserved hypothetical protein; May be involved in cell division.
   
    0.770
VC_2094
Hypothetical protein; Identified by Glimmer2; putative.
       0.754
VC_A0634
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.644
VC_0018
16 kDa heat shock protein A; Similar to GB:L10328 SP:P29209 GB:M94104 PID:147369 PID:290536; identified by sequence similarity; putative; Belongs to the small heat shock protein (HSP20) family.
    
   0.606
VC_A0702
Iron-containing alcohol dehydrogenase; Similar to PID:882540 GB:U00096 PID:1789386; identified by sequence similarity; putative.
    
   0.592
VC_A0871
Transcriptional regulator, GntR family; Similar to GB:U00096 PID:1742348 PID:1742355 PID:1787710; identified by sequence similarity; putative.
   
    0.579
hisC
Histidinol-phosphate aminotransferase; Similar to SP:P06986 GB:U02071 GB:X03416 PID:41695 PID:41710; identified by sequence similarity; putative; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.522
VC_A0777
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.496
dsbE
Thiol:disulfide interchange protein DsbE; Involved in disulfide bond formation. Catalyzes a late, reductive step in the assembly of periplasmic c-type cytochromes, probably the reduction of disulfide bonds of the apocytochrome c to allow covalent linkage with the heme. Possible subunit of a heme lyase (By similarity); Belongs to the thioredoxin family. DsbE subfamily.
   
   0.484
VC_1343
Peptidase, M20A family; Similar to SP:P54542 PID:1303956 GB:AL009126; identified by sequence similarity; putative.
  
    0.481
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.