Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_2094Hypothetical protein; Identified by Glimmer2; putative. (257 aa)    
Predicted Functional Partners:
VC_2093
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.754
VC_0425
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.659
VC_A0849
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.602
VC_1893
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.578
VC_1824
PTS system, nitrogen regulatory IIA component, putative; Similar to GB:U00096 PID:1788726 PID:1799794; identified by sequence similarity; putative.
  
     0.539
VC_A0568
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.507
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.502
VC_A1114
ParB family protein; Similar to SP:P08867 GB:M12987 GB:X04619 PID:148592 PID:42432; identified by sequence similarity; putative; Belongs to the ParB family.
 
     0.485
VC_0901
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.478
VC_1899
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.469
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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