Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2098Hypothetical protein; Identified by Glimmer2; putative. (73 aa)    
Predicted Functional Partners:
VC_2099
Flavodoxin 1; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
 
     0.806
seqA
seqA protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
 
     0.764
VC_2557
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.764
VC_1271
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.761
VC_1909
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.756
VC_0115
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.745
VC_2097
Esterase/lipase YbfF, putative; Similar to GB:U00096 PID:1786902; identified by sequence similarity; putative.
       0.741
VC_2444
General secretion pathway protein B, putative; Similar to GB:X81473 SP:P45755 PID:551217; identified by sequence similarity; putative.
  
     0.741
VC_1885
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.731
VC_2344
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.721
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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