Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VC_2100Conserved hypothetical protein; Identified by Glimmer2; putative. (229 aa)    
Predicted Functional Partners:
VC_2101
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.987
VC_1233
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.938
VC_2103
Transcriptional regulator, LysR family; Similar to GB:X73124 SP:P39592 PID:413948 GB:AL009126; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
 
     0.745
VC_0693
Response regulator; Similar to SP:P33356 PID:405856 GB:U00096 PID:2367130; identified by sequence similarity; putative.
    
 0.505
VC_0223
ADP-heptose--LPS heptosyltransferase II, putative; Similar to GB:L42023 SP:P44011 PID:1003930 PID:1222457 PID:1204774; identified by sequence similarity; putative.
   
    0.415
VC_0225
Lipopolysaccharide biosynthesis protein, putative; Similar to GB:L42023 PID:1003419 PID:1222185 PID:1204517 PID:1573227; identified by sequence similarity; putative.
   
    0.415
VC_0235
Lipopolysaccharide biosynthesis protein, putative; Similar to PID:992970; identified by sequence similarity; putative.
   
    0.415
VC_0236
ADP-heptose--LPS heptosyltransferase II; Similar to PID:1916630; identified by sequence similarity; putative.
   
    0.415
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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