| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VC_2119 | prmB | VC_2119 | VC_2118 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Adenine-specific methylase, putative; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | 0.754 |
| VC_2119 | rplD | VC_2119 | VC_2595 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | 0.730 |
| VC_2119 | rpmB | VC_2119 | VC_0218 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein L28; Similar to GB:L42023 SP:P44364 PID:1006103 PID:1221060 PID:1205200; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL28 family. | 0.695 |
| VC_2119 | rpmG | VC_2119 | VC_0219 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein L33; Similar to GB:J01677 SP:P02436 PID:147709 PID:290486 GB:U00096; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL33 family. | 0.695 |
| VC_2119 | rpmH | VC_2119 | VC_0007 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein L34; Similar to GB:L42023 SP:P44370 PID:1006197 PID:1221112 PID:1205248; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL34 family. | 0.695 |
| VC_2119 | rpsG | VC_2119 | VC_0360 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.708 |
| VC_2119 | rpsJ | VC_2119 | VC_2597 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.711 |
| VC_2119 | rpsL | VC_2119 | VC_0359 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.708 |
| VC_2119 | rpsT | VC_2119 | VC_0679 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.702 |
| VC_2119 | rpsU | VC_2119 | VC_0520 | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | Ribosomal protein S21; Similar to GB:J01687 SP:P02379 GB:V00346 PID:147754 PID:42868; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bS21 family. | 0.730 |
| prmB | VC_2119 | VC_2118 | VC_2119 | Adenine-specific methylase, putative; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | 0.754 |
| prmB | rplD | VC_2118 | VC_2595 | Adenine-specific methylase, putative; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | 0.488 |
| rplD | VC_2119 | VC_2595 | VC_2119 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0115 family. | 0.730 |
| rplD | prmB | VC_2595 | VC_2118 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Adenine-specific methylase, putative; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | 0.488 |
| rplD | rpmB | VC_2595 | VC_0218 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L28; Similar to GB:L42023 SP:P44364 PID:1006103 PID:1221060 PID:1205200; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL28 family. | 0.990 |
| rplD | rpmG | VC_2595 | VC_0219 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L33; Similar to GB:J01677 SP:P02436 PID:147709 PID:290486 GB:U00096; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL33 family. | 0.994 |
| rplD | rpmH | VC_2595 | VC_0007 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein L34; Similar to GB:L42023 SP:P44370 PID:1006197 PID:1221112 PID:1205248; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL34 family. | 0.969 |
| rplD | rpsG | VC_2595 | VC_0360 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rplD | rpsJ | VC_2595 | VC_2597 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| rplD | rpsL | VC_2595 | VC_0359 | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). As the V.cholerae S10 leader can be regulated in vitro by the E.coli L4 protein this suggests the endogenous protein controls its own S10 operon in a similar fashion. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.998 |
