STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2146Conserved hypothetical protein; Identified by Glimmer2; putative. (154 aa)    
Predicted Functional Partners:
VC_2147
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.798
VC_0351
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.760
VC_2609
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.738
VC_2145
tyrA protein; Similar to GP:6648543; identified by sequence similarity; putative.
     
 0.731
bamC
Lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.715
VC_1342
MutT/nudix family protein; Similar to SP:P32091 PID:298045; identified by sequence similarity; putative.
  
     0.701
VC_2627
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
     0.692
VC_1106
Preprotein translocase SecA subunit-related protein; Similar to SP:P06979 GB:X03239 PID:41605 GB:U00096 PID:1736570; identified by sequence similarity; putative; Belongs to the UPF0149 family.
  
     0.663
VC_2739
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.663
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.645
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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