STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2147Hypothetical protein; Identified by Glimmer2; putative. (118 aa)    
Predicted Functional Partners:
VC_2146
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.624
VC_A0314
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.543
oadG1
Hypothetical protein; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
  
     0.516
napD
napD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
  
     0.485
VC_2145
tyrA protein; Similar to GP:6648543; identified by sequence similarity; putative.
     
 0.480
VC_1224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.469
VC_1696
DNA-binding protein inhibitor Id-2-related protein; Similar to SP:P41136 PID:1030074; identified by sequence similarity; putative.
  
     0.458
VC_1373
DnaK-related protein; Similar to SP:O32482; identified by sequence similarity; putative.
  
     0.454
VC_0885
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.447
VC_2487
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.422
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.