Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2149Hypothetical protein; Identified by Glimmer2; putative. (95 aa)    
Predicted Functional Partners:
VC_2153
D,D-carboxypeptidase-related protein; Similar to GB:L42023 SP:P43941 PID:1003104 PID:1222012 PID:1204359; identified by sequence similarity; putative.
 
     0.745
VC_2150
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the ArsC family.
       0.724
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.697
VC_2154
Hypothetical protein; Identified by Glimmer2; putative.
       0.697
VC_1748
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.493
VC_2358
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.470
VC_0815
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.447
VC_1892
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0227 family.
  
     0.417
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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