Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
VC_2162Permease PerM, putative; Similar to GB:U00096 SP:P77406 PID:1621505 PID:1788838; identified by sequence similarity; putative. (354 aa)    
Predicted Functional Partners:
VC_2163
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the sulfur carrier protein TusA family.
     
 0.861
VC_2164
Conserved hypothetical protein; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
     
 0.735
VC_2165
Arsenate reductase; Similar to GB:U00096 PID:1788841; identified by sequence similarity; putative.
     
 0.717
VC_2166
Trp repressor-binding protein; Similar to GB:M99166 SP:P30849 PID:148264 GB:U00096 PID:1651499; identified by sequence similarity; putative.
       0.711
VC_2167
Hypothetical protein; Identified by Glimmer2; putative.
       0.711
VC_2195
Flagellar basal-body rod protein FlgG; Similar to GB:U00096 SP:P75939 PID:1787318; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
    
   0.508
VC_2161
Methyl-accepting chemotaxis protein; Similar to PID:1255679; identified by sequence similarity; putative.
       0.482
VC_2168
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.463
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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