Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VC_2168Hypothetical protein; Identified by Glimmer2; putative. (382 aa)    
Predicted Functional Partners:
VC_1887
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.748
lpoA
Lipoprotein, putative; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a).
  
   
 0.735
VC_0457
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.711
VC_2171
Uracil permease; Similar to GB:L42023 SP:P45117 PID:1007126 PID:1221353 PID:1205467; identified by sequence similarity; putative.
       0.710
VC_2060
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.666
VC_0097
Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.636
VC_2169
Hypothetical protein; Identified by Glimmer2; putative.
       0.610
VC_2170
Hypothetical protein; Identified by Glimmer2; putative.
       0.610
VC_2627
DamX-related protein; Similar to SP:P11557 GB:Z19601 PID:41226 PID:43274 PID:606322; identified by sequence similarity; putative.
  
  
 0.547
VC_1487
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.510
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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