STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_2235Conserved hypothetical protein; Identified by Glimmer2; putative. (245 aa)    
Predicted Functional Partners:
gloB
Hydroxyacylglutathione hydrolase GloB, putative; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.861
zapD
Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.691
VC_2465
sigma-E factor regulatory protein RseB; Similar to SP:P46186 PID:1050876 PID:987646 PID:1045630 GB:U00096; identified by sequence similarity; putative.
  
     0.671
VC_0434
Octaprenyl-diphosphate synthase; Similar to SP:P19641 GB:X68873 PID:388220 PID:606125 GB:U00096; identified by sequence similarity; putative; Belongs to the FPP/GGPP synthase family.
  
 
 0.658
VC_0890
Geranyltranstransferase; Similar to GB:D00694 SP:P22939 PID:216584 GB:U00096 PID:1773105; identified by sequence similarity; putative; Belongs to the FPP/GGPP synthase family.
  
 
 0.658
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
  
 0.580
VC_0084
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.566
VC_0459
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.564
fadR
Fatty acid metabolism regulator protein; Multifunctional regulator of fatty acid metabolism.
  
     0.546
VC_0163
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.542
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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