Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VC_2276Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0255 family. (415 aa)    
Predicted Functional Partners:
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
 
     0.928
VC_0964
PTS system, glucose-specific IIA component; Similar to GB:J02796 SP:P08837 GB:M93578 GB:M93579 GB:M93580; identified by sequence similarity; putative.
    
 
 0.896
ompU
Outer membrane protein OmpU; Forms pores that allow passive diffusion of small molecules across the outer membrane.
  
  
 0.796
VC_2473
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.772
VC_0153
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.766
VC_1731
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.766
VC_0872
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0253 family.
  
     0.752
lapA
Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.751
VC_0037
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.720
VC_A1008
Outer membrane protein, putative; Similar to PID:1658032; identified by sequence similarity; putative.
  
  
 0.719
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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