Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rimKRibosomal protein S6 modification protein; Similar to SP:P17116 GB:X15859 PID:42747 GB:U00096 PID:1651386; identified by sequence similarity; putative. (301 aa)    
Predicted Functional Partners:
VC_2280
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.996
VC_2282
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.962
VC_A0514
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.779
VC_1162
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.768
VC_2279
Aminoacyl-histidine dipeptidase; Similar to GB:M34034 SP:P15288 GB:X14790 PID:1208983 PID:147140; identified by sequence similarity; putative.
     
 0.701
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
     
 0.602
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.575
arcA
Arginine deiminase; Similar to GB:X14694 SP:P13981 GB:S43866 PID:45286; identified by sequence similarity; putative.
      
 0.553
fbp
Fructose-1,6-bisphosphatase; Similar to SP:P09200 GB:X12545 PID:41416 PID:537074 GB:U00096; identified by sequence similarity; putative.
      
 0.536
fhs
Formate--tetrahydrofolate ligase; Similar to GB:J02911 SP:P21164 PID:144816; identified by sequence similarity; putative; Belongs to the formate--tetrahydrofolate ligase family.
      
 0.534
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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